MERMAID is a web service which helps the users to prepare and run Coarse-grained
molecular dynamics simulations for their studies in their computational field.
Because it is good that you have planned to study Coarse-grained molecular dynamics simulations.
MERMAID provides a simplified graphical user interface for the preparation of the required input
files to perform Coarse-grained molecular dynamics simulations.
Insert a Project ID and a valid RCSB PDB Accession Code or upload a
PDB structure. The Project ID consists of alphanumeric characters, so spaces and other
non-standard symbols are not allowed. Remember your project ID for future uses.
Define the Force Field, membrane composition, ions and solvent for your simulation.
Also, you can choose among a variety of lipids and other parameters. If you are new in MDCG simulations,
default parameters are suggested.
Select the parameters for Minimization, Equilibration NVT, Equilibration NPT and Production.